Department of Fluid Phase Separations
Department of
Fluid Phase Separations
Institute of Analytical Chemistry of the Czech Academy of SciencesInstitute of Analytical Chemistry of the CAS

Cellular and (bio)particle analysis

The cell membrane is composed mainly of a lipid bilayer with embedded proteins and carbohydrates. Using electrophoretic techniques, biosensing and spectrometric methods, we study the physicochemical properties of the plasma membrane of microorganisms and biomimicking nanoparticles. The characterization and identification of individual properties of biological membranes and their models is crucial for a better understanding of membrane structural factors.

We also develop methods to identify microorganisms in various complex matrices (e. g., biological fluids) using a combination of CE and MALDI mass spectrometry. In capillary electrophoresis, we use capillaries with internal surfaces treated with supercritical water to concentrate and purify the microbial cells being analyzed while achieving higher separation efficiencies.

For separation and purification of proteins from biological samples such as cell lysates and body fluids, we develop and use preparative instrumentation based on bidirectional isotachophoresis/moving boundary electrophoresis operating in pH gradient from 3.9 to 10.1. The protein separation and focusing take place in nonwoven fabric of trapezoidal shape and in continuous divergent flow. The liquid fractions with separated proteins are compatible with further downstream processing.

Collaborations

Masaryk University, Faculty of Medicine, Department of Microbiology, Brno (Veronika Holá)
St. Anne's University Hospital Brno (Filip Růžička)
University of Helsinki, Helsinki, Finland (Susanne Wiedmer)

Projects

NU22-05-00110 "Poly-microbial basis of non-healing wounds infections and therapeutic potential of 3D bioprinting-based concept for infections treatment " (2022-2025)
Novel chip-based IEF device for fractionation of bacteria prior to MS identification
Identification of Aspergillus conidia in bronchoalveolar lavage using off-line combination of CE and MALDI-TOF/MS

Recent publications

S. Jaikishan, M. Lavainne, H. Ravald, K. Scobbie, F. Duša, R. Maheswari, J. Turpeinen, I. Eikemans, R. Chen, J. Rantala, V. Aseyev, N. N. Maier, S. K. Wiedmer, Fragment-based approach to study fungicide-biomimetic membrane interactions, Soft Matter. 20 (2024) 5954-5968.B. Buszewski, D. Błońska, E. Kłodzińska, M. Konop, A. Kubesová, J. Šalplachta, Determination of pathogens by electrophoretic and spectrometric techniques, Crit. Rev. Anal. Chem. (2023) 1-24.J. Šalplachta, A. Kubesová, D. Moravcová, F. Duša, Analysis of fungi by capillary electrophoresis, Trends Anal. Chem. 159 (2023) 116947.M. Stastna, K. Slais, Preparative separation of immunoglobulins from bovine colostrum by continuous divergent-flow electrophoresis, J. Sep. Sci. 46 (2023) e2200679.M. Horká, F. Růžička, A. Siváková, P. Karásek, J. Šalplachta, R. Pantůček M. Roth, Capillary electrophoretic methods for classification of methicillin-resistant Staphylococcus aureus (MRSA) clones, Anal. Chim. Acta 1227 (2022) 340305.M. Horká, F. Růžička, P. Karásek, J. Šalplachta, A. Siváková, M. Roth, Classification of clinical Cutibacterium acnes isolates at phylotype level by capillary electrophoretic methods in roughened fused silica capillary, Talanta 247 (2022) 123565.F. Duša, J. Šalplachta, M. Horká, K. Lunerová, K. Rosenbergová, O. Kubíček, Novel chip-based isoelectric focusing device for fractionation of bacteria prior to their mass spectrometry identification, Anal. Chim. Acta 1192 (2022) 339333.M. Stastna, K. Slais, Preparative continuous flow electrophoretic instrumentation for purification of biological samples, Electrophoresis 42 (2021) 2103-2111.